PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 329038
Common NameARALYDRAFT_329038, WRKY34
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 569aa    MW: 61946.4 Da    PI: 5.7052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
329038genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32180237260
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
             dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  329038 180 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHIIEIIYTGAHNHPK 237
             8****************************************.***************85 PP
2WRKY97.49.3e-31372429158
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
             ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v + Y g+H+h
  329038 372 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTSYIGKHTH 429
             59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.478174238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-29177238IPR003657WRKY domain
SuperFamilySSF1182904.45E-26177238IPR003657WRKY domain
SMARTSM007745.0E-36179237IPR003657WRKY domain
PfamPF031066.3E-25180236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-33357432IPR003657WRKY domain
SuperFamilySSF1182907.59E-27364432IPR003657WRKY domain
PROSITE profilePS5081134.234367432IPR003657WRKY domain
SMARTSM007741.3E-34372431IPR003657WRKY domain
PfamPF031062.0E-23373429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAGFDNEAGV MGEWFDCSIN HRKRSKAELG RDFSLEYIKK EDSLHTSFQE TPSCSRGALR  60
ERIAARSGFI APRLNTEDIL QSTYLTISSP GLSPATLLES PVFLSNPSLS PTTGKLSSLP  120
SDKAKEELFD GITTSLAFQS ISGSSLDPTN IALETDDSQD YEERQLGGLG DSIASGAPAD  180
DGYNWRKYGQ KLVKGSEYPR SYYKCTHPNC EVKKKVERSR EGHIIEIIYT GAHNHPKPPP  240
NRRSGIGSSG TGQDMQIDGT EQEGYPGTNE NIEWTSPVSA ELEYGSHSGS MQVQSGTQFG  300
YGDAAANTLF RDEDEDDRTS HMSVSLTYDG EVDESESKRR KLEAYATEVS GTTRASREPR  360
VVVQTTSDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTA NGCTVTKHVE RASDDFKSVL  420
TSYIGKHTHV VPAARNSSHI GSGSSGTLQG GLATQTHNHN VHYPVPHSRS EGLATANSSL  480
FDFQSHLRPP TGFSAYIGQS ELSDLSMPGL TIGQEKLTSL QAPDIGDPAG LMLHLAAEPK  540
VEAVSLQGLD LSPSSLIYRE IMSRLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-31180433878Probable WRKY transcription factor 4
2lex_A6e-31180433878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap329038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526490.0AY052649.1 Arabidopsis thaliana WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
GenBankBT0303610.0BT030361.1 Arabidopsis thaliana At4g26440 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867564.10.0probable WRKY transcription factor 34 isoform X2
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLD7MF960.0D7MF96_ARALL; Microspore-specific promoter 3
STRINGfgenesh1_pm.C_scaffold_70012650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]