PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 328547
Common NameARALYDRAFT_328547
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 609aa    MW: 69148.5 Da    PI: 7.5795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
328547genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.1e-29166224158
             ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
             ++Dg++WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  328547 166 VKDGFQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSLLVATYEGTHNH 224
             58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-28156225IPR003657WRKY domain
PROSITE profilePS5081125.568161227IPR003657WRKY domain
SuperFamilySSF1182903.4E-24164225IPR003657WRKY domain
SMARTSM007741.4E-33166226IPR003657WRKY domain
PfamPF031061.4E-23167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005737Cellular Componentcytoplasm
GO:0071944Cellular Componentcell periphery
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGSFQLFIFQ KKEVSVSAST HLKRKWLEQD ESASELREEL NRVNSENKKL TEMLARVCES  60
YNALHNHLEK LQSPEIDQTD KPIKKRKQDP DDFLGFPIGL SSGKTENSSS NEDHQQHEQK  120
NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLRHMTKQS VILQTVKDGF QWRKYGQKVT  180
RDNPSPRAYF RCSFAPSCPV KKKVQRSAED PSLLVATYEG THNHLGPNAS EGDVTSQGGS  240
STVTLDLVNG GHSLLALEKK ERNTMQEVLI QQMASSLTKD SKFTAALAAA ISGRVVGRWL  300
SGLRSSKGKR DAGEQQEDDT RRYQLPPISC STKRLNQSRE PEANTFESQS REAPLEMGIG  360
SFLFYLVVAS KTELDKMTNL RMQMEMFLLN AKEELRKKEL QANPSMSSNE ASGYQFSPQE  420
FSNLASSIFQ ESSSSVLQEE YTEFEVSKPE DHHRGTDCHS KLQAEVGRLP LDEKAEDRHT  480
KHQIQRQCKL KDNEVTKSHI PEMVVVTDER YGVCPYELEK KLHELLETRQ QEELVKLETA  540
LNRVERRLQE KETEVSWWKD AARLLAQRVP ESSQSGLEWC NPDSSTCSER SVPRSYKACS  600
KHRTSFSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19154227274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates asymmetric cell division (ACD), especially in stomatal-lineage cells (PubMed:21963668). Acts as a stomatal lineage scaffold which regulates subcellular localization and transient polarization of kinases (e.g. ASK7/BIN2 and ASK3/SK12) involved in ACD in a BASL-dependent manner (PubMed:30429609). Promotes the differentiation of both pavement cells and stomata (PubMed:30429609). {ECO:0000269|PubMed:21963668, ECO:0000269|PubMed:30429609}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap328547
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273330.0AK227333.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-02-E14.
GenBankBT0105590.0BT010559.1 Arabidopsis thaliana At4g31805 gene, complete cds.
GenBankJN6638040.0JN663804.1 Arabidopsis thaliana polar localization during asymmetric division and redistribution (POLAR) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872891.10.0protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION isoform X1
SwissprotQ6NQ990.0POLAR_ARATH; Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION
TrEMBLD7MAV40.0D7MAV4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70007740.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1042422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-179WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Facette MR,Smith LG
    Division polarity in developing stomata.
    Curr. Opin. Plant Biol., 2012. 15(6): p. 585-92
    [PMID:23044038]
  2. Stamatiou G, et al.
    Forward genetic screening for the improved production of fermentable sugars from plant biomass.
    PLoS ONE, 2013. 8(1): p. e55616
    [PMID:23383246]
  3. Kierzkowski D,Lenhard M,Smith R,Kuhlemeier C
    Interaction between meristem tissue layers controls phyllotaxis.
    Dev. Cell, 2013. 26(6): p. 616-28
    [PMID:24091013]
  4. Houbaert A, et al.
    POLAR-guided signalling complex assembly and localization drive asymmetric cell division.
    Nature, 2018. 563(7732): p. 574-578
    [PMID:30429609]