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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
327841 |
| Common Name | ARALYDRAFT_327841 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 445aa MW: 49570.8 Da PI: 9.1087 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 327841 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 230.8 | 1.1e-70 | 22 | 279 | 8 | 272 |
GAGA_bind 8 e..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
e r k+ y+ ++++l +++++ms++aerda+++e n a++++k+a+a+rd+a+ qrdkal+er++a++e +++l al ++en
327841 22 EngRYKPDYNkgtqsvnmmpqhqikeQHNALV--MNKKIMSILAERDAAVKEINEAVAATKEALAARDEALEQRDKALSERDNAIMETESALNALRYREN 119
44566664444666666666555543556666..99**************************************************************** PP
GAGA_bind 90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
+l+ l+ + +g ++ + e++ pi++ ++ea ++k k r+k+ k+ ++k kk +e+ +++v++++ ++s++
327841 120 NLNYILS--CA-KRGGSHSC---------------VTDESHLPAPSPISTIPPEAAHTKLAK---RKKESKQGARSKGKKVGEDLNRQVASPG--KKSRK 196
9664441..11.12222221...............123455567789999999998888887...55666666677777888899********..56*** PP
GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL+ L
327841 197 DWDSYDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVGGRKMSGSVFSRLLSLL 279
********************************************************************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 445 aa
Download sequence Send
to blast |
MFDIILAIAV ESKRMECGGQ YENGRYKPDY NKGTQSVNMM PQHQIKEQHN ALVMNKKIMS 60
ILAERDAAVK EINEAVAATK EALAARDEAL EQRDKALSER DNAIMETESA LNALRYRENN 120
LNYILSCAKR GGSHSCVTDE SHLPAPSPIS TIPPEAAHTK LAKRKKESKQ GARSKGKKVG 180
EDLNRQVASP GKKSRKDWDS YDVGLNLVTF DETTMPVPMC TCTGTARQCY KWGNGGWQSS 240
CCTTTLSQYP LPQMPNKRHS RVGGRKMSGS VFSRLLSLLT IRFKSRMKDE ARFVIVFTVD 300
SSVNANILVL VFFATFFSGI AFAFEWTFHG KNHSGFQWII YYALSLIILP ILIWLGLGIV 360
MIVSSSHGSM QVASVAVEEE QCVNSFAEDS GNEETKENNC ESLAIVVDSD KKKCTDKVFE 420
NKTAKLKRTV SFPLHSHVRS CRTR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF633603 | 0.0 | EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds. |
