PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327750
Common NameARALYDRAFT_327750
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 215aa    MW: 22870.7 Da    PI: 5.2679
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327750genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.81.1e-3511106195
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
             +C aCk+lrrkC+++Cv+apyf +e+ +++f +vhk+FGasn +kll  +p ++r da+ +l+yeA ar+rdPvyG+vg+i++lq+q e + ++++
  327750  11 PCGACKFLRRKCVAECVFAPYFDSEEgTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQAELAYVQTQ 106
             7*********************998879*********************************************************99887665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.41210114IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3511106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSGSTTGSGG PCGACKFLRR KCVAECVFAP YFDSEEGTSH FTAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQAEL AYVQTQLSTL QGLPPPNPQN  120
NSRTEAASSS NAPPISSVDN KSNVSSASLH IPCMSQQQEE QAKEAIEVST ESVDLSTLFG  180
LEDPVDEDGD LNALAREFLS KYLTGGKCRP SSPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-34497496LOB family transfactor Ramosa2.1
5ly0_B2e-34497496LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap327750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738550.0AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879137.11e-155LOB domain-containing protein 31
SwissprotO813221e-131LBD31_ARATH; LOB domain-containing protein 31
TrEMBLD7M5R71e-157D7M5R7_ARALL; LOB domain protein 31
STRINGfgenesh1_pm.C_scaffold_60029701e-158(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-106LOB domain-containing protein 31