PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 327634
Common NameARALYDRAFT_327634
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 412aa    MW: 47211.4 Da    PI: 6.0303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
327634genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.71.5e-4261353128
     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvg 101
             +G+rF Pt eel+++yLk+k+ gk+  ++e+i+e++i++++P  Lp  +k+k+++  wyfF++++ ++a++k ++r+t+sgyWkatg d+++++k  ++ ++g
  327634   6 VGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPslSKIKSDDPVWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKrgNRGEIG 108
             7************************999999***************5449999999**************************************9666667** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
             +kktLv+y+gr pkg+ t Wvmhey++
  327634 109 IKKTLVYYEGRVPKGVWTPWVMHEYHI 135
             *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.5774153IPR003441NAC domain
SuperFamilySSF1019411.44E-465153IPR003441NAC domain
PfamPF023656.1E-256135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVKDLVGYRF YPTGEELINH YLKNKILGKT WLVDEAISEI NICSYDPIYL PSLSKIKSDD  60
PVWYFFCPKE YTSAKKKVTK RTTSSGYWKA TGVDRKIKDK RGNRGEIGIK KTLVYYEGRV  120
PKGVWTPWVM HEYHITCLPQ DQRNYVICQV MYKGEDGDVP SGGNNSSEPS QSMVSDSNTV  180
RETITTAPEF EQPGQENFFG MSVDDLRTPM NEQKQEDFSL WDVLDPDMLF SDNNNSTVQP  240
QAPHLAPNDD EFLGGLRHVN REQVEYLFAN EDFISRPTLS VTENRNDHRP KKALSGIIVD  300
YSSDSNSDAE SISATSYQGT SSPGDDSVGS SNRHFLIHTD TSRLVLLWRR REAELVYYRR  360
SNGEKPQEST VYLSDEDDHR HHTLGGSHWQ HHIGFTNRQN LNPLMKFDRE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-25715320165NO APICAL MERISTEM PROTEIN
1ut4_B7e-25715320165NO APICAL MERISTEM PROTEIN
1ut7_A7e-25715320165NO APICAL MERISTEM PROTEIN
1ut7_B7e-25715320165NO APICAL MERISTEM PROTEIN
4dul_A7e-25715320165NAC domain-containing protein 19
4dul_B7e-25715320165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap327634
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293120.0AK229312.1 Arabidopsis thaliana mRNA for putative NAM-like protein, complete cds, clone: RAFL16-57-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876994.10.0LOW QUALITY PROTEIN: NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLD7M4U10.0D7M4U1_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60028540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]