PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

326242

Common Name

ARALYDRAFT_326242

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 335aa MW: 38060.2 Da PI: 6.6015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
326242	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	5.1e-56	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lppGfrFhPtdee++++yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ kg lvg+k 326242 21 LPPGFRFHPTDEEIITYYLKEKVLNSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMK 122 79***********************999.67***********99999*************************************9**** PP NAM 104 ktLvfykgrapkgektdWvmheyrle 129 ktLvfy+grapkgekt+Wvmheyrle 326242 123 KTLVFYRGRAPKGEKTNWVMHEYRLE 148 **********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-63	18	173	IPR003441	NAC domain
PROSITE profile	PS51005	58.937	21	172	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITYYLK EKVLNSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPSITTQ 180 PLTRIPIEDL TRMDSLENID HLLDFSSLPP LIDPSFMGQT EQPNFKPINP PTYNISSPIQ 240 PHHFNTYQSI FNHQGFGSAS GSTYNNNEMI KMEQSLVSVS QETCLSSDVN ANTTTTTEVS 300 SGPVMKQEMG MMGMVNGSKS YEDLCDLRGV LWDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	8	174	2	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	326242

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228369	0.0	AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22.
GenBank	BT005713	0.0	BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.
GenBank	BT006070	0.0	BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873881.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FK44	0.0	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	D7LXT4	0.0	D7LXT4_ARALL; ANAC087
STRING	fgenesh1_pm.C_scaffold_6001462	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	0.0	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	326242
Entrez Gene	9307881

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]