PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 325871 | ||||||||
Common Name | ARALYDRAFT_325871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 207aa MW: 23461.8 Da PI: 9.5156 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.8e-33 | 15 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lp G+rFhPt++el+ +yL +k+ +++l+ ++i+ +d++ ++P ++p +++ek+ yfF+k+++ +++++r + +gyWk gk++++++ g++ g++ 325871 15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLTFPG--DQKEKQRYFFCKKREVSSNEHRIKIPSGDGYWKPIGKERPIIA-CGKTFGIR 113 699*************************99.88***************4..4578899******************99****************.999***** PP NAM 104 ktLvfy..kgrapkgektdWvmheyrl 128 +tL+fy ++++++ +kt+W m ey l 325871 114 RTLAFYetNKSSSNCNKTKWSMTEYCL 140 ******4434667778*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-39 | 10 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.575 | 15 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-19 | 16 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEVEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFFSHPLTF 60 PGDQKEKQRY FFCKKREVSS NEHRIKIPSG DGYWKPIGKE RPIIACGKTF GIRRTLAFYE 120 TNKSSSNCNK TKWSMTEYCL AGFASAKVFG EWAVYNVYER KGSKGRKQRK SREGDDEELS 180 CVHHFTVGSN HETGPPPPSP PTSADE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 13 | 140 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 325871 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084216 | 0.0 | AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871595.1 | 1e-154 | NAC domain-containing protein 41 | ||||
TrEMBL | D7M5Z0 | 1e-152 | D7M5Z0_ARALL; ANAC084 | ||||
STRING | fgenesh1_pm.C_scaffold_6001091 | 1e-153 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-132 | NAC domain containing protein 84 |
Link Out ? help Back to Top | |
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Phytozome | 325871 |
Entrez Gene | 9309712 |