PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 325325
Common NameARALYDRAFT_325325, WRKY26
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 316aa    MW: 35482.9 Da    PI: 10.0352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
325325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32129187260
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
             dDgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s   ++++ei+Y+g+Hnh+k
  325325 129 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQITEIVYKGSHNHPK 187
             8********************************************************85 PP
2WRKY104.36.7e-33245303159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+ +dpk v++tYeg+H+h+
  325325 245 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCGVRKHVERAFQDPKSVITTYEGKHKHQ 303
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-28120188IPR003657WRKY domain
PROSITE profilePS5081124.248123188IPR003657WRKY domain
SuperFamilySSF1182901.19E-25123188IPR003657WRKY domain
SMARTSM007742.7E-34128187IPR003657WRKY domain
PfamPF031067.7E-24129186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-36230305IPR003657WRKY domain
SuperFamilySSF1182908.63E-29237305IPR003657WRKY domain
PROSITE profilePS5081136.116240305IPR003657WRKY domain
SMARTSM007745.8E-37245304IPR003657WRKY domain
PfamPF031062.7E-25246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGSIDRQRAV PKFKTATPSP LPLSPSPYFT MPPGLTPADF LDSPLLFTSS NILPSPTTGT  60
FPAQSLNWKN NGLLIEQNEI KYDVKEQLDF SFNNNHTSPP LFLPSMVTQS LPQLDVSKSE  120
IMSRNKTSDD GYNWRKYGQK QVKGSENPRS YFKCTYPNCL TKKKVETSLV KGQITEIVYK  180
GSHNHPKPQS TKRSSSTTAA AHQNSSHGDG KDIGEDEADA KRWKREENVK EPRVVVQTTS  240
DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTFTGCGVRK HVERAFQDPK SVITTYEGKH  300
KHQIPTPKRG HTSGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37129306878Probable WRKY transcription factor 4
2lex_A5e-37129306878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap325325
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846920.0AY084692.1 Arabidopsis thaliana clone 115195 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871249.10.0probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T30.0WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD7LZX60.0D7LZX6_ARALL; WRKY DNA-binding protein 26
STRINGfgenesh1_pm.C_scaffold_60005450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.10.0WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]