PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27086.4 Da PI: 9.1793

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
325029	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	80	132	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k 325029 80 KKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWK 132 45699***********************************************9 PP
2	HD-ZIP_I/II	115.1	4.2e-37	79	169	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+e+ kL+++rKv+l++eLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd + +e+++L++ev++Lr+ l+ 325029 79 KKKRLTSGQLASLERSFQEDIKLDSDRKVKLSQELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVFREKQMLHEEVKKLRAILR 169 9**************************************************************************************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.57E-18	68	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	74	134	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	76	138	IPR001356	Homeobox domain
CDD	cd00086	1.21E-15	79	135	No hit	No description
Pfam	PF00046	2.2E-16	80	132	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	83	132	IPR009057	Homeodomain-like
PRINTS	PR00031	3.8E-5	105	114	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	109	132	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.8E-5	114	130	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEWSTNSNVE NVRVAFMPPP WPESSSFNSL HSFNFDPYAA GNSYTPGDTQ TGPVISVPES 60 EKIMNAYRFP NNNNNEMIKK KRLTSGQLAS LERSFQEDIK LDSDRKVKLS QELGLQPRQI 120 AVWFQNRRAR WKAKQLEQLY DSLRQEYDVV FREKQMLHEE VKKLRAILRD QGLIKKQISA 180 GTIKVSGEED TTEVSSVVVA HPRTENLNTN QITGGNQVYG QYNNPMLVAS SGWLSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	325029

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU352029	0.0	EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871058.1	1e-177	putative homeobox-leucine zipper protein ATHB-51 isoform X3
Swissprot	Q9LZR0	1e-165	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	D7LWT7	1e-176	D7LWT7_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_6000249	1e-176	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-143	homeobox 51

Link Out ? help Back to Top
Phytozome	325029
Entrez Gene	9309182

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]