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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
324207 |
| Common Name | ARALYDRAFT_324207, ORG3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 259aa MW: 28994.8 Da PI: 6.7869 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 324207 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 50.1 | 5e-16 | 76 | 128 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++ +hn+ Er RR++iNs f+ Lr++lP + +skKls +++ + +YI +Lq
324207 76 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPATVSRSLKYIPELQ 128
6789*************************66...*******************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010106 | Biological Process | cellular response to iron ion starvation |
| GO:0055072 | Biological Process | iron ion homeostasis |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MCALVPPLFP NFGWPSTGEY DSYYLAGDIL NNGAFLDFPV PEETYGAVTA VTHHQSFGVS 60
ASSEGNEIDN NPVVVKKLNH NASERDRRKK INSLFSSLRS CLPASDQSKK LSIPATVSRS 120
LKYIPELQEQ VKKLIKKKEE LLVQVSGQRN IEHYVKPQPK AVASYISTVS ATRLGDNEVM 180
VQISSSKIHN FSISNVLSGL EEDGFVLVDI SSSRSQGERL FYTFHLQMDK IENYKLNCEE 240
LSQRMLYLYE ECGNSFRL*
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| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF488577 | 0.0 | AF488577.1 Arabidopsis thaliana clone bHLH039 putative bHLH transcription factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Matsuoka K, et al.
Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis.
Plant Cell Physiol., 2014. 55(1): p. 87-98
[PMID:24192296] - Maurer F,Naranjo Arcos MA,Bauer P
Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
PLoS ONE, 2014. 9(6): p. e99234
[PMID:24919188] - Martínez-Trujillo M, et al.
Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
Plant Mol. Biol., 2014. 86(1-2): p. 35-50
[PMID:24928490] - Van Dingenen J, et al.
Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
Plant Cell Environ., 2017. 40(9): p. 1748-1760
[PMID:28444690] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Naranjo-Arcos MA, et al.
Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein.
Sci Rep, 2017. 7(1): p. 10911
[PMID:28883478] - Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
Plant J., 2018. 94(1): p. 157-168
[PMID:29396986] - Kurt F,Filiz E
Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
Biometals, 2018. 31(4): p. 489-504
[PMID:29546482] - Omidbakhshfard MA, et al.
GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia.
PLoS Genet., 2018. 14(7): p. e1007484
[PMID:29985961]
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