PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 324178
Common NameARALYDRAFT_324178
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 633aa    MW: 69678.3 Da    PI: 5.3557
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
324178genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.5e-13181240261
             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
              + k+  r+++NRe+A  sRqRKk ++eeLe+kvk++ +  ++L ++++    e  +l++
  324178 181 DDEKKKVRLIRNRESAHLSRQRKKHYVEELEDKVKNMHSTISELSSKMSYFMAENVTLRQ 240
             56799***********************************99999998877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-14180244IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.887182242IPR004827Basic-leucine zipper domain
PfamPF001707.8E-11183241IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.45E-12184242No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-16184242No hitNo description
CDDcd147043.84E-19185235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAEPVLEDTY LTFSSDFDSI TIPPSSFDNF CNSSSDQVGN SISDLRFLID DDDGDGDFQF  60
TSEDDLYFPP KNESFAIPVD AREMSGDFTP ASELSGDCVK EETEKNTNGV LISTPIYCDR  120
ESPGDSDRSG TTQSLSLSAQ ESAKRKKEIQ EDSREESRNN KYRTLDQDGF ASVVTGGDEE  180
DDEKKKVRLI RNRESAHLSR QRKKHYVEEL EDKVKNMHST ISELSSKMSY FMAENVTLRQ  240
QMGPRNGMCQ PSMYPPLAPM AYPWIPYPAY MVKPQGSQVP LLPIPRLKPQ HSVAKVKKFK  300
KVASVSVLGL LFCLFLFCAL APIVNISYGE YKSNYGVYDQ SRGRVLVVDS NRAHCGGDSD  360
QGVRRNVSET GNLGPPRNSS EPLVASLFVP RNEKLVKIDG NLIIHSVLAS EKARDSETKN  420
KEGKSGVATT TKGIISPAMP LPDSTRTMDM SKHLYSETPK ALSSSGSDDA LKEQLKLTTA  480
NGQMQQWFRE GVAGPMFSSG MCTEVFQFDV SSTSGSIMPA SPPTEQSKNT DTHKGKKNRR  540
ILHGGLSASD FNLTKDHKCS SKENFQDTKP APSMVVSVLV DPREGGDGDI DEMMGGTKSL  600
SPVFIVLLVD DVKYVTYSCI LPRPEVPHLV ST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap324178
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1639720.0AL163972.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T5P19.
GenBankAL3909210.0AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878099.10.0bZIP transcription factor 49
SwissprotQ9LXX40.0BZP49_ARATH; bZIP transcription factor 49
TrEMBLD7LVI40.0D7LVI4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50017220.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16991911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.10.0basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]