![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 324164 | ||||||||
Common Name | ARALYDRAFT_324164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19431 Da PI: 6.0208 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.2 | 1.2e-21 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100 lp+GfrF+Pt+ e+ +++Lkkk+ g+++++ +v +e+ d+++ +P+d+p +e++wy+F+++++++ t++ +n W g++++vl+ +g+lv 324164 8 LPVGFRFRPTNCEIANYFLKKKALGQPMKARTVPEEChDVFSRHPRDFPGY--PKEEHWYYFCRKRNNQVTSNSPN------LWTPIGEETNVLDPknNGALV 102 79****************************88888889***********43..4789*******999877655544......5***********98778888* PP NAM 101 glkktLvfy..........kgrapkgektdWvmheyrl 128 g+k+ L++ +++++ k +W+m+e +l 324164 103 GIKRRLTLIaqeeesdnicLSDEEEAPKYNWFMDEISL 140 *********766655554437788888*******9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-29 | 7 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.535 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-13 | 9 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MEPTHKALPV GFRFRPTNCE IANYFLKKKA LGQPMKARTV PEECHDVFSR HPRDFPGYPK 60 EEHWYYFCRK RNNQVTSNSP NLWTPIGEET NVLDPKNNGA LVGIKRRLTL IAQEEESDNI 120 CLSDEEEAPK YNWFMDEISL PQTVADTDWV LCHIFGKTIK PIFTESE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 324164 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ056627 | 0.0 | DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002878091.1 | 1e-124 | NAC domain-containing protein 104 | ||||
TrEMBL | D7LVG8 | 1e-123 | D7LVG8_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_5001708 | 1e-124 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56520.1 | 1e-110 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 324164 |
Entrez Gene | 9314159 |