PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 32335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 25316.7 Da PI: 8.2389 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 136 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f r G+C +Gd+C+F+Hgp 32335 136 VPKCYAFER-GECDRGDSCRFSHGP 159 678******.*************96 PP | |||||||
2 | zf-CCCH | 23.3 | 1.1e-07 | 179 | 199 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f+ G C+yGd+C+F+H+p 32335 179 CYAFQN-GNCSYGDSCRFSHDP 199 677777.*************86 PP | |||||||
3 | zf-CCCH | 19.3 | 2e-06 | 215 | 233 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C fa+ G C +Gd+C+F+H 32335 215 CYAFAE-GNCTRGDSCRFSH 233 999***.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13451 | 9.9E-21 | 86 | 131 | IPR025306 | Probable zinc-binding domain |
PROSITE profile | PS50103 | 14.014 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-4 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-5 | 178 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.887 | 178 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 178 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 179 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.558 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3 | 212 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 215 | 233 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGDKTPKSPK EKKEKKEKKE KKEKKEKRER DESSGGDQSG SEEKAEKKKK VDDADDGEDS 60 DSGFKVHAKK SADELKPGKV STGNYEDVTL NCRDCNGEFV FTVGEQEFYA TKGWTNQPTR 120 CEPCKKAKKE RFGEDVPKCY AFERGECDRG DSCRFSHGPG SAAGRGGGGG RGGGGGGVCY 180 AFQNGNCSYG DSCRFSHDPN APPSRPGSRG PAGKCYAFAE GNCTRGDSCR FSHA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | GGRGGGGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000586 | 0.0 | CP000586.1 Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001418549.1 | 1e-165 | predicted protein | ||||
TrEMBL | A4RZC4 | 1e-164 | A4RZC4_OSTLU; Uncharacterized protein | ||||
STRING | ABO96842 | 1e-165 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3507 | 13 | 14 |
Link Out ? help Back to Top | |
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Phytozome | 32335 |