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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 320100 | ||||||||
Common Name | ARALYDRAFT_320100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26289.8 Da PI: 9.0868 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84 | 9e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i++++ rqvtfskRr+g++KKA+EL +LCdaev++iifsst+kly+++s 320100 10 KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSSTDKLYDFAS 59 79**********************************************86 PP | |||||||
2 | K-box | 78.2 | 2.1e-26 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + +q+e++ L++e+++Lq+++Rhl Ge+L+ Ls+keL++Le+qLe sl+ iR k++++l+++i+el +k l++en ++++k++ 320100 81 NPASEVKFWQREAETLRQELHSLQENHRHLTGEQLNGLSVKELRNLESQLEMSLRGIRMKREHILTNEIKELTRKRSLLHHENLEISRKVQ 171 567889*********************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.71E-37 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 9.29E-31 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-24 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.619 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSS TDKLYDFASS 60 SVKSTIERFN TTKMEQQQLL NPASEVKFWQ REAETLRQEL HSLQENHRHL TGEQLNGLSV 120 KELRNLESQL EMSLRGIRMK REHILTNEIK ELTRKRSLLH HENLEISRKV QRIHQENVEL 180 YKQVYATSNT NGLGHHELVD GANESLVEVR LQLSQPEQSH YETSSNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-18 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 320100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493558 | 0.0 | AB493558.1 Arabidopsis thaliana At2g22630 mRNA for hypothetical protein, partial cds, clone: RAAt2g22630. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002878626.1 | 1e-165 | agamous-like MADS-box protein AGL17 | ||||
Swissprot | Q38840 | 1e-148 | AGL17_ARATH; Agamous-like MADS-box protein AGL17 | ||||
TrEMBL | D7LE25 | 1e-164 | D7LE25_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_4000157 | 1e-164 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22630.1 | 1e-151 | AGAMOUS-like 17 |
Link Out ? help Back to Top | |
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Phytozome | 320100 |
Entrez Gene | 9316521 |
Publications ? help Back to Top | |||
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