PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 320036
Common NameARALYDRAFT_320036
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 203aa    MW: 23328.7 Da    PI: 6.4179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
320036genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30108166159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYG+K+++gs+fpr+Y++C+ ++C+vkkk+er++++p++v +tYeg+Hnh+
  320036 108 LDDGYKWRKYGKKPITGSPFPRHYHKCSNPDCNVKKKIERDTNNPDYVLTTYEGRHNHP 166
             59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-2899168IPR003657WRKY domain
PROSITE profilePS5081128.128103168IPR003657WRKY domain
SuperFamilySSF1182902.48E-25104168IPR003657WRKY domain
SMARTSM007741.7E-31108167IPR003657WRKY domain
PfamPF031065.6E-22109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNYPSNPNPS STDFTEFFKF DDFDDTFHMI MEEIGREDHQ SSSPTLSWTS SEKLVAAEIT  60
SPLQINQATS PMSLEIGDKD ETKKRKRHKD DPILHVFKTK SVDQKVALDD GYKWRKYGKK  120
PITGSPFPRH YHKCSNPDCN VKKKIERDTN NPDYVLTTYE GRHNHPSPSV VYCDSDDFDL  180
TSLNNWSFQT TNTYSFSHSA PY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-231081691778Probable WRKY transcription factor 4
2lex_A7e-231081691778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00270DAPTransfer from AT2G21900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap320036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0252610.0BT025261.1 Arabidopsis thaliana At2g21900 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880404.11e-150probable WRKY transcription factor 59
SwissprotQ9SJ091e-112WRK59_ARATH; Probable WRKY transcription factor 59
TrEMBLD7LCL41e-149D7LCL4_ARALL; WRKY transcription factor 59
STRINGfgenesh1_pm.C_scaffold_40000931e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138351726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21900.11e-114WRKY DNA-binding protein 59