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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
319991 |
Common Name | ARALYDRAFT_319991 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
SRS |
Protein Properties |
Length: 177aa MW: 20160.9 Da PI: 9.1822 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
319991 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 93.4 | 4.8e-29 | 6 | 61 | 5 | 60 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60
+ +C+dCGnqakk+C ++RCRtCCks++f+C+th+kstWvpa++r ++++q +++
319991 6 GRRCEDCGNQAKKECLYMRCRTCCKSKAFHCQTHIKSTWVPAYRRPHHKHQSQSQP 61
569******************************************99977766543 PP
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2 | DUF702 | 86 | 8.8e-27 | 60 | 128 | 85 | 154 |
DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ st+ ++ + ++ ++P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvf+GiL+dqGlee
319991 60 QPPSTSNPKR-VQIRTTLGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGLEE 128
3333333333.344556667***********************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MMMIMGRRCE DCGNQAKKEC LYMRCRTCCK SKAFHCQTHI KSTWVPAYRR PHHKHQSQSQ 60 PPSTSNPKRV QIRTTLGHFP AELSSLADFR CVKVSSIDDG KEQYAYQTTV NIGGHVFRGI 120 LHDQGLEEGM IDHHYNKNSN NHQESLHPST SSCPLMTTSP FTDFMSRAQF SSVLRR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY163777 | 1e-178 | AY163777.1 Arabidopsis thaliana hypothetical protein (F3K23.16) mRNA, partial cds. |