PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317804
Common NameARALYDRAFT_317804
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 542aa    MW: 59128.6 Da    PI: 6.6543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317804genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-20158244186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W++  + +L++ ++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk +++++ ++  +s s++p+f+++e
    317804 158 EWSDAAIACLLDTYSDKFTQLNRGNLRGRDWEEVASSVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMTSG-GTSASHWPWFKKME 244
               5*************************************888899****************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-21156246No hitNo description
Gene3DG3DSA:3.40.1160.108.1E-65291533IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.84E-52299533IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.29E-117301534No hitNo description
PfamPF006965.5E-24302511IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016310Biological Processphosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ HHHHHQVLHH TPYAPRRFNP KPSNQIHLPH HQRNGDEDDE  60
NDVVVEASSA FHGVGVNPFA GDENSNPYDD NNAGVDEDED LDANRSRIGG VRVEKRQSQE  120
ELSDGGTTNG GETTPYGSFK RPRTSSSSAG EYRKDREEWS DAAIACLLDT YSDKFTQLNR  180
GNLRGRDWEE VASSVSERCE KLSKSVEQCK NKIDNLKKRY KLERHRMTSG GTSASHWPWF  240
KKMEDIVGNS LATKGASDED RSGSSMGNTV KPARRYPLVT YNPGVQINNV KSKATSNPRW  300
RRVVLKISGA ALACTGPNNI DPKVINLIAR EVAMACRLGV EVAIVVGSRN FFCGSTWITA  360
TGLDRTTAYH ISMMASVMNS ALLQSSLEKI GVQARLQTAI SVQGVGEPYN RQRATRHLDK  420
GRVVIFGGIG ATLGNPLLSS DASAALRAID INAEAVVKGT NVDGVYDCHS QDSNVTFEHI  480
SFQDLASRGL TSMDTMALNF CEENSIPAVV VFNFLEAGNI TKALCGEQVG TMIDRSGRGV  540
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A4e-552925331239Uridylate kinase
3ek5_B4e-552925331239Uridylate kinase
3ek5_C4e-552925331239Uridylate kinase
3ek5_D4e-552925331239Uridylate kinase
3ek5_E4e-552925331239Uridylate kinase
3ek5_F4e-552925331239Uridylate kinase
3ek6_A4e-552925331239Uridylate kinase
3ek6_B4e-552925331239Uridylate kinase
3ek6_C4e-552925331239Uridylate kinase
3ek6_D4e-552925331239Uridylate kinase
3ek6_E4e-552925331239Uridylate kinase
3ek6_F4e-552925331239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap317804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888387.10.0uncharacterized protein LOC9320838 isoform X1
TrEMBLD7L8U80.0D7L8U8_ARALL; Aspartate/glutamate/uridylate kinase family protein
STRINGfgenesh1_pm.C_scaffold_30008200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein