PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 317478 | ||||||||
Common Name | ARALYDRAFT_317478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 342aa MW: 38861.4 Da PI: 4.4985 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.3e-19 | 25 | 112 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ff+v+++ + +s +v+p+++ e+ + + +kt +l + gr W+v + + +++++++++GW +Fv +n+Lk+g+f++F +dg+++ v++ 317478 25 FFTVFLSQY--SSESMVIPRSYYEHL--PRRLPKTAILVGTGGRFWKVAM--TSRREQVYFEQGWGNFVADNELKDGEFLTFVFDGHKSY--EVSI 112 677774444..44559*******554..456899****************..99999**************************9986655..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-21 | 18 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-22 | 22 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.198 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.94E-19 | 23 | 113 | No hit | No description |
Pfam | PF02362 | 4.3E-16 | 25 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-20 | 25 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-5 | 242 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0081 | 243 | 331 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.41E-6 | 250 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MWATKSRRCA VHTSSMASSD VLPRFFTVFL SQYSSESMVI PRSYYEHLPR RLPKTAILVG 60 TGGRFWKVAM TSRREQVYFE QGWGNFVADN ELKDGEFLTF VFDGHKSYEV SIYGRGDCKE 120 TRAVIQVEEI SDDDTEDYSV SLHSLNNVSL HSLDNDSLQA DVEIESDSLM ADVEIESDSL 180 QVDAEIESDS DYSPENPDTA STSVESVEVV NPTTSMTSRQ RSYKKKTIEN PELYLDDPNN 240 ICFETCLKLR KFELLVDAQF VKDYSLKFGD QVDYIDGYGK LTATMTKWAD QRVCIKKWQK 300 ICDRNSLTEN DSILCEVLRN EDKVVYAIKI HIFRDAAAAS T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 6e-19 | 14 | 118 | 1 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 317478 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC018907 | 1e-134 | AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-134 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020886540.1 | 0.0 | B3 domain-containing protein REM21 isoform X2 | ||||
Swissprot | Q9M8K2 | 0.0 | REM21_ARATH; B3 domain-containing protein REM21 | ||||
TrEMBL | D7L4S8 | 0.0 | D7L4S8_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh1_pm.C_scaffold_3000494 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 317478 |
Entrez Gene | 9320629 |