PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317308
Common NameARALYDRAFT_317308
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 441aa    MW: 49376.2 Da    PI: 5.352
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317308genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-33238292155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+lm+ +gLt++hvkSHLQkYR+
   317308 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLMNSPGLTIYHVKSHLQKYRT 292
              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.749235295IPR017930Myb domain
SuperFamilySSF466891.09E-17236292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-31237294IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-24238292IPR006447Myb domain, plants
PfamPF002491.2E-10240291IPR001005SANT/Myb domain
PfamPF143791.2E-21326373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MTLASDFGFP TAMSSSFTTL EERYRHNFPN TLWVSSGQEL MNNSPVPCQV FPLVSGGSSG  60
GNLFSSSSGF CNGVYVSSSS QARPSVSTVP RDRMTVAHVS GEGRRQGCSV ETQSLQLINQ  120
PQEQKNMTWS SDQLLGFFDF PVPDPQAESS RTMVSSKEVL LKYEWPDWAD QLISDDGLEP  180
NWSELLGDPN VLNLDSKITT SSSDIARQEI VFKNQHQVDP SMEPFDTKNS PASSMTSKQR  240
MRWTPELHEA FVEAINQLGG SERATPKAVL KLMNSPGLTI YHVKSHLQKY RTARYKPELS  300
ENREEPQVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK QLHEQLEIQR SLQLQIEEQG  360
RYLQMMIEKQ QKMQENKKDT SFSSSMPEVD PCLAPSPNLS QAFHKATNSE SSITDQNGCS  420
TMDQSESASG TSNRKRVRED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-29238296260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap317308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186300.0AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882350.10.0myb family transcription factor PHL13 isoform X1
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLD7L2520.0D7L252_ARALL; Transcription factor
STRINGfgenesh1_pm.C_scaffold_30003240.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]