PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 317082
Common NameARALYDRAFT_317082
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 469aa    MW: 51201.5 Da    PI: 8.2351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
317082genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.3e-32210266259
             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  317082 210 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 266
             8****************************************.***************8 PP
2WRKY105.52.8e-33354412159
             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
             ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
  317082 354 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHD 412
             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28200268IPR003657WRKY domain
SuperFamilySSF1182902.22E-25207268IPR003657WRKY domain
SMARTSM007743.4E-35209267IPR003657WRKY domain
PfamPF031061.5E-24210265IPR003657WRKY domain
PROSITE profilePS5081124.03210268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36339414IPR003657WRKY domain
SuperFamilySSF1182904.18E-29346414IPR003657WRKY domain
PROSITE profilePS5081137.539349414IPR003657WRKY domain
SMARTSM007741.5E-38354413IPR003657WRKY domain
PfamPF031061.7E-25355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DNFPDVLTPD NQRTTSFSQL LAGAMSVSPG GGGRSTAGMF AGGGPMFTIP SGFSPSSLLT  120
SPMFFPPQAP AQTGFVHSQP QPQQQPPGPP RPDTFPHHMP PSTSTAVHGR QSFEVSTQAD  180
QRARNHYNNP GNNNNNNRSY NVVNVDKPAD DGYNWRKYGQ KPIKGCEYPR SYYKCTHVNC  240
PVKKKVERSS DGQITQIIYK GQHDHERPQN RRGGGGRDST EVGDIHFVGG AGQMMESSDD  300
SGYGKDHEED NNDDDDDDDF PASKIRKIDG VSTTHRTVTE PKIIVQTKSE VDLLDDGYRW  360
RKYGQKVVKG NPHPRSYYKC TTPNCTVRKH VERASTDAKA VITTYEGKHN HDVPAARNGT  420
AAAAGTSDHH RMRSMSGNNM QQHMSFGNNN NTGQSPVLLR LKEEKITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-39210415878Probable WRKY transcription factor 4
2lex_A2e-39210415878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap317082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262540.0AF426254.1 Arabidopsis thaliana WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884294.10.0probable WRKY transcription factor 58
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLD7LAJ30.0D7LAJ3_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_30000980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.10.0WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]