PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 31702
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 362aa    MW: 39786.1 Da    PI: 9.1659
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
31702genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.63e-244393252
  RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
            +k i l d+s+ F+lpi++AAkeL+vc+TvLK +CR +GI+RWP+Rk+++l
   31702 43 TKIIALIDVSSRFALPIAQAAKELDVCVTVLKSTCRAFGIMRWPYRKMRKL 93
            578999*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.23333113IPR003035RWP-RK domain
PfamPF020424.3E-194893IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSAVETTTNT GLPIRMPNDA RGATHAIDPL SDVHTAVKSA TGTKIIALID VSSRFALPIA  60
QAAKELDVCV TVLKSTCRAF GIMRWPYRKM RKLNTMIKQL ERSARNAAEE NILHHRMKRL  120
EACRRARDLL VLEAEANARA RIGKPASQQS AKAEIASTGA RYDSSGRLGN FKDPGYAFDT  180
DHKGYALHEA MRKMMETEGL DTIGRSGHVD VESDPLSELA SQVTAVQERF VRRPNRNKRQ  240
LPTRCPEEMA LHEFVMGNPG LEAMASLTAR LRRQKESKKQ TSEHADDADG EVDIDGDDGK  300
QIAWIVSSQS PAYTVNVRPS NPTARIPDVL VEERSRREAT SPLEPSLALF PLNVSAIHSA  360
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005850.0CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417754.10.0predicted protein
TrEMBLA4RXH90.0A4RXH9_OSTLU; Uncharacterized protein
STRINGABO960470.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-14RWP-RK domain-containing protein