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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 315745 | ||||||||
Common Name | ARALYDRAFT_315745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CAMTA | ||||||||
Protein Properties | Length: 1032aa MW: 115226 Da PI: 5.656 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 170.6 | 2.4e-53 | 49 | 165 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLe 103 ++e ++rwlk+ e++ iL+n+e+ +lt+++++rp+sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e++ptf+rr+yw+L+ 315745 49 YQEaRSRWLKPPEVLFILQNHERLTLTNTAPQRPTSGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEQDPTFRRRIYWMLD 151 56779************************************************************************************************** PP CG-1 104 eelekivlvhylev 117 e+e+ivlvhy++v 315745 152 PEYEHIVLVHYRDV 165 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.308 | 45 | 171 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.8E-83 | 48 | 166 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-46 | 51 | 165 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.8E-8 | 461 | 549 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 9.09E-7 | 462 | 547 | No hit | No description |
Pfam | PF01833 | 1.5E-8 | 462 | 545 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 6.16E-18 | 462 | 546 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 2.6E-14 | 660 | 756 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.8E-15 | 661 | 756 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.433 | 662 | 754 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.94E-13 | 667 | 754 | No hit | No description |
Pfam | PF12796 | 1.0E-7 | 683 | 755 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.766 | 695 | 727 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0021 | 695 | 724 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1900 | 734 | 763 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 59 | 812 | 834 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.876 | 813 | 841 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.13E-8 | 813 | 922 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 3.2 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.352 | 870 | 899 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.015 | 873 | 890 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.1E-5 | 892 | 914 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.883 | 893 | 917 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.6E-4 | 895 | 914 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1032 aa Download sequence Send to blast |
MNNNTIRSVA EDHYPSCDIA TIFVAICRNP PVLFLEILHF VKYEISTLYQ EARSRWLKPP 60 EVLFILQNHE RLTLTNTAPQ RPTSGSLFLF NKRVLKFFRK DGHQWRRKRD GRAIAEAHER 120 LKVGNAEALN CYYAHGEQDP TFRRRIYWML DPEYEHIVLV HYRDVSDREE GQQAGGQVYQ 180 FAPIPSTLFL SPNSIGTQNV SYNHYIGDSS DIHQQHSSTS PGIAEVNSNL EGSGSSSEFE 240 QALKMLKEQL SIGDEQVNSV DPLNIQPESL DSLQFLEYSN DRDHLVQPTT IYQRPENNKL 300 ERCYGGNFGA QYNAKNDSNK LERCYGGYVG AEYHSSNLML VKNDSGGTGG SGDQGSESWK 360 DVLEACEASI PLNSEGSTPS SAKGLLAGLQ EDTNWSYNNQ VDQSTLLLPQ DLGSFEVPVS 420 YSALGALENN DDYCRMMDNE GKIGLPFEEE MRLAGAHKKK FTIHDISPEW GYSNETTKVI 480 IVGSFLCDPT ESTWSCMFGN AQVPFEIIKE GVIRCRAPPC GPGKVNLCIT SGDGLSCSEI 540 REFEYRDKPD TCCPKCSERQ TSDMSTSPDE LSILVMFVQT LLSDRPSERK SNLESGNDKL 600 LKILKADDDQ WRHVIGAVLD GSASSTKTVD WLLQELLKDK LDTWLSSRSC DEDYTTCSLS 660 KQEQGIIHMV AGLGFEWALY PILGHGVSVD FRDINGWSAL HWAARFGSEK MVAALIASGA 720 SAGAVTDPSR QDPNGKTAAS IAASNGHKGL AGYLSEVALT NHLSSLTLEE TESSKDTAQV 780 QTEITLNSIS EQSPSGNEDQ VSLKDTLAAV RNAAQAAARI QAAFRAHSFR KRKQREAAMA 840 ACLQEYGIYC EDIEGISAMS KLTFGKVRNY HLAALSIQKK YRGYKGRKEF LELRQKVVKI 900 QAHVRGYQIR KNYKVICWAV GIIDKVVLRW RRKGVGLRGF RQDVESTEDS EDEDILKVFR 960 KQKVDGAVNE AFSRVLSMAN SPEARQQYHR VLKRYCQTKA ELGKTETLIG DDDDGLFDIA 1020 DMEYDTLFTL P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 315745 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY510026 | 0.0 | AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890718.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | D7KV17 | 0.0 | D7KV17_ARALL; Calmodulin binding protein | ||||
STRING | fgenesh1_pm.C_scaffold_2000778 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | 315745 |
Entrez Gene | 9324652 |
Publications ? help Back to Top | |||
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