PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 314555
Common NameARALYDRAFT_314555
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91853.3 Da    PI: 6.368
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
314555genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
    314555 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
              5679*****************************************************97 PP
2START1693.3e-531613692205
             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS
   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102
             +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g+++l +++l+a++
  314555 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELLYMQLYAPT 262
             7899******************************************************.7777777777****************9999************** PP

             -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTX CS
   START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlq 201
             +l+p Rdf+ +Ry+  l++g++v++++S+ s+q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l++s  + ++kt++a+l+
  314555 263 TLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLYESPKVLAQKTTMAALR 365
             ************************************999999************************************************************* PP

             XXXX CS
   START 202 rqce 205
             ++++
  314555 366 QLKQ 369
             9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466894.71E-171680IPR009057Homeodomain-like
CDDcd000869.29E-171777No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
PROSITE profilePS5007115.2732076IPR001356Homeobox domain
CDDcd146861.42E-669108No hitNo description
PROSITE profilePS5084825.437151379IPR002913START domain
CDDcd088752.15E-73155371No hitNo description
SMARTSM002341.2E-37160370IPR002913START domain
SuperFamilySSF559613.85E-36160372No hitNo description
Gene3DG3DSA:3.30.530.202.2E-20160346IPR023393START-like domain
PfamPF018528.0E-51161369IPR002913START domain
PfamPF086702.8E-52694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH  120
TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVDVM  240
NVLPTANGGT IELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM  300
PLVQNFVRAE MLPSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT  360
MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR GFNEAVNGFT DEGWSVIGDS  420
MDDVTITVNS SPDKLMGINL TFSNGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYL AAAVKVGPCS ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI  540
VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKQEVSSP  600
NRTLDLASAL EIGSAGTKAS ADQSGNSTCA RSVMTIAFEF GIESHMQEHV ASMARQYVRG  660
IISSVQRVAL ALSPSHISSQ VGLRTPLGTP EAQTLARWIC QSYRGYMGVE LLKSNSEGNE  720
SILKNLWHHT DAIICCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDDNGRKTLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFV FINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap314555
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868586.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLD7KIP00.0D7KIP0_ARALL; ATHB-15
STRINGfgenesh1_pm.C_scaffold_10033350.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]