PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 314370 | ||||||||
Common Name | ARALYDRAFT_314370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19557.6 Da PI: 9.8114 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.9 | 2.1e-14 | 38 | 120 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + k++++ +p +f+ ++g k + +tle++ g + ++++ r+ +++++++kGW+eF++a+ L +g f+ F+++g+s+f +v +f+ 314370 38 KTIKEKMMKVPARFV-RFGPK--LTDNVTLETPVGFKCSIRI--RRIGDEVWFEKGWSEFAEAHFLSDGHFLFFHYKGDSCF--RVVIFD 120 56678899*******.66633..5568***************..**************************************..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-19 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 26 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.84E-14 | 29 | 120 | No hit | No description |
PROSITE profile | PS50863 | 10.334 | 30 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-11 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-12 | 38 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MHTNRRSSGR ITSAATQRRL KPEPEPTVKK FIKVILLKTI KEKMMKVPAR FVRFGPKLTD 60 NVTLETPVGF KCSIRIRRIG DEVWFEKGWS EFAEAHFLSD GHFLFFHYKG DSCFRVVIFD 120 VSASEIDYPL DKVYVIESDA DDDDKEEGLP DLKLKKKPRV NIKSYNTW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 158 | KLKKKPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 314370 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007504 | 1e-106 | AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-106 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866754.1 | 1e-105 | B3 domain-containing protein At1g49475 | ||||
Swissprot | Q9XIB4 | 7e-86 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | D7KEX5 | 1e-120 | D7KEX5_ARALL; DNA binding protein | ||||
STRING | fgenesh1_pm.C_scaffold_1003150 | 1e-121 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 3e-88 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 314370 |
Entrez Gene | 9327575 |
Publications ? help Back to Top | |||
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