PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 314370
Common NameARALYDRAFT_314370
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 169aa    MW: 19557.6 Da    PI: 9.8114
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
314370genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-1438120998
             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
              + k++++ +p +f+ ++g k   +  +tle++ g + ++++  r+ +++++++kGW+eF++a+ L +g f+ F+++g+s+f  +v +f+
  314370  38 KTIKEKMMKVPARFV-RFGPK--LTDNVTLETPVGFKCSIRI--RRIGDEVWFEKGWSEFAEAHFLSDGHFLFFHYKGDSCF--RVVIFD 120
             56678899*******.66633..5568***************..**************************************..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-1925122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1826122IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-1429120No hitNo description
PROSITE profilePS5086310.33430122IPR003340B3 DNA binding domain
SMARTSM010194.0E-1131122IPR003340B3 DNA binding domain
PfamPF023623.2E-1238120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MHTNRRSSGR ITSAATQRRL KPEPEPTVKK FIKVILLKTI KEKMMKVPAR FVRFGPKLTD  60
NVTLETPVGF KCSIRIRRIG DEVWFEKGWS EFAEAHFLSD GHFLFFHYKG DSCFRVVIFD  120
VSASEIDYPL DKVYVIESDA DDDDKEEGLP DLKLKKKPRV NIKSYNTW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158KLKKKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMap314370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0075041e-106AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBankCP0026841e-106CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866754.11e-105B3 domain-containing protein At1g49475
SwissprotQ9XIB47e-86Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLD7KEX51e-120D7KEX5_ARALL; DNA binding protein
STRINGfgenesh1_pm.C_scaffold_10031501e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]