PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313859
Common NameARALYDRAFT_313859
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 648aa    MW: 72881.9 Da    PI: 5.914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313859genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.2e-53241511128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+  +g
  313859  24 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KKLIIG 124
             699***************************.99***************6448899999**************************************.8999** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
             +kktLvfy+grap+ge+t+W+mheyr+
  313859 125 MKKTLVFYRGRAPRGERTNWIMHEYRA 151
             *************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-6415174IPR003441NAC domain
PROSITE profilePS5100558.59424174IPR003441NAC domain
PfamPF023652.7E-2725150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MNQTKNKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID  60
VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK  120
LIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD  180
PSNCEEIENV NSTPTTTRCS PDDTSSEMVQ ETSTSGVHAL DRSDDTERCL SDKGNDVKPD  240
VSVINNTSVN HAETSHAKDR VLGKSLVEEN HLLRDIPTLY GPILSEKSYY PGQSSISFAT  300
SHIDSMYSSD FGNCGYGLHF QDGASEQDAS LTDVLDEVFH NHNESSSERK DFAIPNMMHW  360
PGNTRLLSTE YPFLKDSVAF LDGGADVSGP QHFVPDILAS RWVSEHNLDS KEVVEIQSSS  420
GSSRTVTPLH NNVFGQYASS SYATIDPFNY NVNQPEQSSF ELHPGNISGF NARSRENQTN  480
LDSVVDQGTA PRRIRLQIEP PLTPVINKKE RDADNYEEDE VQSAMSKVVE EESANLSTQG  540
TAQRRIRLQT RLRKPLITIN NRERDSNVRE EEAGHHSKEK GDVSSSSSSS SSSSSSWQKQ  600
KKSLVQYSSM VILVAVIVVL VGVWKESRDA KCSFLFHQLD SFKGMFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-471917815172NAC domain-containing protein 19
3swm_B6e-471917815172NAC domain-containing protein 19
3swm_C6e-471917815172NAC domain-containing protein 19
3swm_D6e-471917815172NAC domain-containing protein 19
3swp_A6e-471917815172NAC domain-containing protein 19
3swp_B6e-471917815172NAC domain-containing protein 19
3swp_C6e-471917815172NAC domain-containing protein 19
3swp_D6e-471917815172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap313859
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461890.0BT046189.1 Arabidopsis thaliana unknown protein (At1g33060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893753.20.0NAC domain-containing protein 14
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLD7KIF50.0D7KIF5_ARALL; ANAC014
STRINGfgenesh1_pm.C_scaffold_10026390.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.10.0NAC 014