 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
312981 |
| Common Name | ARALYDRAFT_312981 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
WOX |
| Protein Properties |
Length: 198aa MW: 22140.7 Da PI: 4.9323 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 312981 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.9 | 4.8e-20 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+t+ ql++Le+ +++ + +p+ ++++e++++l ++te+ V++WFqNrRa+ k+
312981 77 RHRWTPTSMQLQILENIYKEgSGTPNPRRIKEITMELsehgEITEKSVYNWFQNRRARSKR 137
89*****************99**************************************97 PP
|
| 2 | Wus_type_Homeobox | 99.2 | 3.2e-32 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RWtPt+ Q++iLe++yk+G tPn ++i++it+eL+e+G+i++k V++WFQNr+aR+++kq
312981 76 TRHRWTPTSMQLQILENIYKEGSGTPNPRRIKEITMELSEHGEITEKSVYNWFQNRRARSKRKQ 139
689***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MEQESLNGTF DDRVMTEEQM EALRKQIAIY AVLCDQLVFL HNSLSSVPLL SSGMNSMGGG 60
YFDPMVASSS AHGMSTRHRW TPTSMQLQIL ENIYKEGSGT PNPRRIKEIT MELSEHGEIT 120
EKSVYNWFQN RRARSKRKQP QTTTITSGQA DDAAVTTTDE RESCGGDSGA FESYEHILFP 180
SPDLGIEHLL NRDKFID*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 130 | 138 | RRARSKRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC069251 | 1e-154 | AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence. |
| GenBank | CP002684 | 1e-154 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
