PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 312283
Common NameARALYDRAFT_312283
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 193aa    MW: 20737 Da    PI: 4.5258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
312283genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-161966355
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+++l+g
  312283 19 YRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAAAAYDVAALALKG 66
            9***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-91766IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-181875IPR016177DNA-binding domain
SMARTSM003805.4E-281880IPR001471AP2/ERF domain
PROSITE profilePS5103220.2711874IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-271875IPR001471AP2/ERF domain
CDDcd000181.28E-161974No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNNTMASSGL GSRRKDPAYR GIRCRSGKWV SEIREPKKTT RIWLGTYPTA EMAAAAYDVA  60
ALALKGRGAV LNFPGSAQSY PVPESKSAAD IRTAAAAAAA MKGCEEGEEE KEATEMNSSS  120
SQLRARESHV NNDVASSSWC GTEFMDEEEV LNMPNLLANM AEGMMVAPPS WMGSRPSDDS  180
PENSNDEDLW GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13574172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap312283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1457760.0DQ145776.1 Arabidopsis thaliana Ap2/EREBP transcription factor (At1g12630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889943.11e-139ethylene-responsive transcription factor ERF027
SwissprotQ38Q392e-88ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP861e-138D7KP86_ARALL; DNA binding protein
STRINGfgenesh1_pm.C_scaffold_10010631e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-70ERF family protein