PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 31215.m000027
Common NameRCOM_1819990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 316aa    MW: 34724.3 Da    PI: 9.7047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
31215.m000027genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59e-104592154
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                   sg+kGV+    +g ++AeIr +      krf+lg+f t  eAaka+ +a+ + +
  31215.m000027 45 SGVKGVSLLA-NGIFRAEIRAY-----GKRFNLGRFKTLGEAAKAYAEAAHRQW 92
                   79*****998.8*********6.....5**********99**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133926.6E-7435IPR003615HNH nuclease
SuperFamilySSF540601.29E-7639No hitNo description
SuperFamilySSF541712.68E-74593IPR016177DNA-binding domain
PROSITE profilePS510329.1546109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-54892IPR001471AP2/ERF domain
PfamPF135544.4E-22225312IPR025395Protein of unknown function DUF4128
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQSGSWPRAD IDHINGCRTD NRFCNLRAAT RAENLMNMKG SRGASGVKGV SLLANGIFRA  60
EIRAYGKRFN LGRFKTLGEA AKAYAEAAHR QWASESKERA TAVYRRSFEL LGEEMARSKN  120
EEGGRLPYKT GNLSRSILAS TQGMPKTATG PFSGSNVGVV AATLQLDQPA WIGYQAIYAR  180
RMNYGYVGAD KLGRVFNQQG NYFLEYAIEK WPQIVAQAAK EIQGTVEGPP ARQLLADGKP  240
HERNGSLMVT LVQPLGQAAA VYDQIAAGIA EHFIDGTQMR YGAVCVAVSS YPHVQEGYED  300
TGYWTVPVRI PWRCFA
Cis-element ? help Back to Top
SourceLink
PlantRegMap31215.m000027
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9TIJ20.0B9TIJ2_RICCO; Uncharacterized protein
STRINGXP_002538061.10.0(Ricinus communis)