PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 312099
Common NameARALYDRAFT_312099
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 188aa    MW: 21658.2 Da    PI: 9.916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
312099genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-071663254
            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
            r+  n rE+ RR r+++ f+eL +++ +      +Kl   +   +A+ Y+ +L
  312099 16 REQRNLREKDRRMRMKHLFSELSSHVSPT-----RKLPVPQLIDQATSYMIQL 63
            7889**********************997.....7999999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.89E-51267No hitNo description
Gene3DG3DSA:4.10.280.102.9E-71479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.7121463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-41663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-42069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MARAREIGEG NSSSLREQRN LREKDRRMRM KHLFSELSSH VSPTRKLPVP QLIDQATSYM  60
IQLKENVNYL KEKKKTLVQG ELGNLYEGSS LLPKLSIRSR DSTIELNLIM DLNMKRVMLH  120
ELVSIFEEEG AQIMSANLQN LNDRTTYTII AQVPHPLICL YAIISRIGID PSRIEERVRK  180
IIYGYIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMap312099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168610.0AK316861.1 Arabidopsis thaliana AT1G10585 mRNA, partial cds, clone: RAFL05-21-F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867234.11e-123transcription factor bHLH167
SwissprotF4I4E11e-118BH167_ARATH; Transcription factor bHLH167
TrEMBLD7KLF61e-133D7KLF6_ARALL; T10O24.22
STRINGfgenesh1_pm.C_scaffold_10008791e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-120bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]