PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 311885
Common NameARALYDRAFT_311885
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 610aa    MW: 66692.2 Da    PI: 8.0789
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
311885genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-102566445
            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
             k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  311885 25 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 66
            6889*************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-62299IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2892468IPR004827Basic-leucine zipper domain
PfamPF001702.7E-72566IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-62668No hitNo description
CDDcd147084.11E-232678No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-72770No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
PfamPF141442.8E-29107182IPR025422Transcription factor TGA like domain
Gene3DG3DSA:1.25.10.103.2E-32192587IPR011989Armadillo-like helical
SuperFamilySSF483714.74E-32216270IPR016024Armadillo-type fold
SuperFamilySSF483714.74E-32301588IPR016024Armadillo-type fold
CDDcd000203.04E-5304407No hitNo description
SMARTSM001850.0047322362IPR000225Armadillo
PfamPF005141.7E-5323361IPR000225Armadillo
SMARTSM0018515452493IPR000225Armadillo
PROSITE profilePS501769.012463506IPR000225Armadillo
SMARTSM001851.3494537IPR000225Armadillo
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MDFYFHLCSL TLQRKATTSG KQLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLS  60
QLEQELQRAR SQGLFMGGCG PPGPNITSGA AIFDMEYGRW LEDDNRHMSE IRTGLQAHLS  120
DNDLRLIVDG YIAHFDEIFR LKAVAAKADV FHLIIGTWMS PAERCFIWMA GFRPSDLIKI  180
LVSQMDLLTE QQLMGIYSLQ HSSQQAEEAL SQGLEQLQQS LIDTLAASPV IDGMQQMAVA  240
LGKISNLEGF IRQADNLRQQ TVHQLRRILT VRQAARCFLV IGEYYGRLRA LSSLWLSRPR  300
DSVSEQTRAA ALAELRLISK QDPDSRLIIA DAGAIPYLAE TLYSSSHSSQ ENAAATLLNL  360
SITSREPLMS SRGLLDALSH ALRHHDTTTS PAAVQSSAAT IYSLLITEES YRPIIGSKRD  420
IIFSLIHIIR YADSHPRSIK DSLKALFAIA LYPMNRSTMI SLGAIPALFS LIVKDSRSGI  480
VEDATAVMAQ VAGCEESEEG MRRVSGANVL ADLLDPCTGS SLRIKENAVG ALLNLARCGG  540
DAARSEVAAA VASGADEGAM EGIVYVAENG SVKGRKKAVD LLKLVVSGNG GGDSRFDYLL  600
NENPNSRSS*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap311885
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3147570.0AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBankAK2222040.0AK222204.1 Arabidopsis thaliana mRNA for bZip protein AtbZip21, complete cds, clone: RAFL25-08-O22.
GenBankHQ1327430.0HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867925.10.0U-box domain-containing protein 4
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLD7KI130.0D7KI13_ARALL; T27G7.2
STRINGfgenesh1_pm.C_scaffold_10006650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55242441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.20.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]