PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 311756
Common NameARALYDRAFT_311756
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 388aa    MW: 44093.1 Da    PI: 5.3548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
311756genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08332377145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      + +W+t E +  +++ +++G + Wk+I  + +   +Rt  ++k++++
           311756 332 KVPWSTAETLAVLKGYEKYGAN-WKRIKDENPilVRRTNGDIKDKFR 377
                      579*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.151327384IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-7328381IPR009057Homeodomain-like
SuperFamilySSF466897.83E-7329380IPR009057Homeodomain-like
SMARTSM007172.0E-4331382IPR001005SANT/Myb domain
CDDcd116601.07E-11333381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFMEIED GVVEEKNLER LENLVEILHK EGSKVPKSVT EAYCKVAVEC  60
TVKCLAYEKD AKKAYTEAIS SIWLGRIMPL CDKVSCLVTL DLLKCCRRLW KAHNDDKACK  120
TLMDEDTRDK ALVSLRKVVL DLNPILVLEN PNMDESEDIE SSEESQETES MVEAREGVVN  180
QNSQASEAME DEQESLLDTE LERPISGGSK AVYVPRQFKP ISSAVVDRAL RELRASKIEL  240
MNALEKGRPS NLNNEKITEQ ENDVANPSAT NASPRPSLME RRSTAHTYEW KDSLDDSDGE  300
MGDDGVRKSK RKRIVVSPLK RNRVFEGARR PKVPWSTAET LAVLKGYEKY GANWKRIKDE  360
NPILVRRTNG DIKDKFRVEM RREERHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMap311756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195340.0AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889623.10.0uncharacterized protein LOC9328427
TrEMBLD7KG770.0D7KG77_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10005360.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.10.0TRF-like 7