PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 311447
Common NameARALYDRAFT_311447
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 272aa    MW: 32015.4 Da    PI: 4.331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
311447genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.68.7e-1851222118
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrk..nr.atksgyWkatgkdkevlskkge 98 
             p+G rF P+d  lv +yL++ ve+k+ ++   i+++d+y  ePw Lp+ v++   ++kewy+F++  k+ ++ +rk   r   + g+W++   ++e+++ +++
  311447   5 PVGSRFLPKDLGLVRFYLRNMVERKQSSF---ITTMDVYMDEPWLLPH-VNNplfKNKEWYYFVQLTKRRSSVQRKvpGRgGSEGGTWRSNDGKEEIKD-GHQ 102
             89***********************9666...9**************4.333455889******998888765554115666889*************9.888 PP

     NAM  99 lvglkktLvfykgrapkgek 118
                 ++ Lv+ + r +k +k
  311447 103 RSDEQQKLVLCRIRYKKQKK 122
             89999999999877777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-203118IPR003441NAC domain
PROSITE profilePS5100519.8494171IPR003441NAC domain
PfamPF023655.7E-85100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKSFPVGSRF LPKDLGLVRF YLRNMVERKQ SSFITTMDVY MDEPWLLPHV NNPLFKNKEW  60
YYFVQLTKRR SSVQRKVPGR GGSEGGTWRS NDGKEEIKDG HQRSDEQQKL VLCRIRYKKQ  120
KKVNKIRRVN HQAHQTQADL TGLTDELEKM PEGQEDREEQ EEVDLTDFPD ELETMLEGQE  180
DCEQQQEAEL TGFSDDPESM LLDGEEDRDV TQQQQQQQQE EEIPQQQQQE DDDMMVLMDN  240
PNDALALGNY EFVDLTWVDE ISDTIQRREK Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMap311447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869775.11e-169NAC domain-containing protein 6
SwissprotQ9LR741e-117NAC6_ARATH; NAC domain-containing protein 6
TrEMBLD7KCF50.0D7KCF5_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10002270.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.14e-97NAC domain containing protein 6