PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 311334
Common NameARALYDRAFT_311334
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 378aa    MW: 43098.4 Da    PI: 7.9284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
311334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.21.8e-4141322128
     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
             p+G+rF+Ptdee+vv+yL++k  +++  ++++vi++v i +++Pw+Lp + ++k ++++w fFs++++ky +g+++ r+tksg+Wk tgk k++++ +++++g
  311334   4 PVGLRFRPTDEEIVVDYLRPKNLERDtSHVDRVISTVTIRSFDPWELPcQsRIKLKDESWCFFSPKENKYGRGEQQIRKTKSGFWKITGKPKAIMR-NRQKIG 105
             89******************9777774667778**************96348888999**************************************.9999** PP

     NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
              k++L+fy  ++  g+k+dWvmhey++
  311334 106 EKRILMFYYSKELGGSKSDWVMHEYHA 132
             *************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-482150IPR003441NAC domain
PROSITE profilePS5100543.8493150IPR003441NAC domain
PfamPF023651.1E-214131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MENPVGLRFR PTDEEIVVDY LRPKNLERDT SHVDRVISTV TIRSFDPWEL PCQSRIKLKD  60
ESWCFFSPKE NKYGRGEQQI RKTKSGFWKI TGKPKAIMRN RQKIGEKRIL MFYYSKELGG  120
SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREIPSAS SSSSSHGSGI EQSRPSLIPL  180
LENNSEGSSF HSQELQNPSR VGDVQQEAQI EDAIPREEWE TWLNDDDAGE QRSIMFMQDN  240
RNEYRPPKSL TGVFSDYSSD DNDSDLLSAT TNSIQTSSTC DSFGSSNHRV DKIKDLKQSP  300
KSTIKLVSLT QEVSQALITS IDTPEKKKNP SNDAQETEIG EHKLGQETIK KKSAGFFHRM  360
IQKFVKKIHL CSSISRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-27414718162NO APICAL MERISTEM PROTEIN
1ut4_B5e-27414718162NO APICAL MERISTEM PROTEIN
1ut7_A5e-27414718162NO APICAL MERISTEM PROTEIN
1ut7_B5e-27414718162NO APICAL MERISTEM PROTEIN
4dul_A5e-27414718162NAC domain-containing protein 19
4dul_B5e-27414718162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap311334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0605870.0AY060587.1 Arabidopsis thaliana AT3g04420/T27C4_6 mRNA, complete cds.
GenBankBT0008460.0BT000846.1 Arabidopsis thaliana At3g04420/T27C4_6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892092.10.0NAC domain-containing protein 3
SwissprotQ5PP280.0NAC3_ARATH; NAC domain-containing protein 3
TrEMBLD7KB630.0D7KB63_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10001140.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02220.10.0NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]