PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30700
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 346aa    MW: 37132.3 Da    PI: 10.3091
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30700genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-09141186151
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
            s y+GV+  +++g++ A+I +      rk+ +lg f ++eeAa+a+++a+ 
  30700 141 SLYRGVSLLRQTGKYHAQINVQ-----RKQLHLGFFFSEEEAARAYDRAAI 186
            57******************93.....5*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-11141187IPR016177DNA-binding domain
PfamPF008472.4E-4142187IPR001471AP2/ERF domain
PROSITE profilePS5103211.957142201IPR001471AP2/ERF domain
SMARTSM003809.3E-7142207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-10142199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGAYTYDSAT HGPPIGVPRT IGKARTTARG DDAEGDSGSG RSSDAPLSVN VFGGGTQFAR  60
SSPSESEVGT PGRGMEAPRN GTATARPRGR ASSGSKSPTD LSETDSEQSN TGKGDGANKL  120
VHKDLVTNLK AQARRHDSRT SLYRGVSLLR QTGKYHAQIN VQRKQLHLGF FFSEEEAARA  180
YDRAAIFKAS VEGGTICTNM DINDYKDEIP TLQAMTQPEL LQMLHEMKLK SNESSAPNSP  240
RKGIKPRTST NSKQMARENR LDRSNSGSIE HVIIKANSQE PPTSPRFDAL NSAVGVVERE  300
QQGTLSVVNV AASVTVQHTC PGVIDLHISK RRRTRIQPRQ APAAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005830.0CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416711.10.0predicted protein
TrEMBLA4RUQ20.0A4RUQ2_OSTLU; Uncharacterized protein
STRINGABO950040.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP801966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.14e-06target of early activation tagged (EAT) 3