PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30541
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 263aa    MW: 28657.3 Da    PI: 10.4227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30541genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.1e-09178226147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                      r r+++ E e l+++v+++G g+W+ I + +   + R++ ++k++w+++
            30541 178 RERFSQSEAEDLIKGVQLFGLGQWAHIKSSFFqdTSRSGVDLKDKWRNL 226
                      789************************999988**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.45E-1060154IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.902.2E-763148No hitNo description
CDDcd017695.66E-471139No hitNo description
PROSITE profilePS512949.975173231IPR017930Myb domain
SuperFamilySSF466891.88E-11175228IPR009057Homeodomain-like
SMARTSM007174.2E-8177229IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-11177227IPR009057Homeodomain-like
PfamPF002491.2E-6178226IPR001005SANT/Myb domain
CDDcd116601.66E-17180227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTRASKRKAA APVATTKAVA LKEKKGKASV KSAGKQTAND TATSKRRTSD DPYDFDVDQE  60
MYGVTVKWVN KGQTTSEWKF TVPTDATVDA LRGMVHETTG GVLTKDNITL KHKSRTMEPT  120
DAQLGSFGVR DGSDIVLILN NDGQGVPAAP TMVNTQFPGE PVAKKSKKAK DKGGDKKRER  180
FSQSEAEDLI KGVQLFGLGQ WAHIKSSFFQ DTSRSGVDLK DKWRNLVTAS ERPPGFKFRV  240
EYLNDASFLA RVAQVNAESQ AK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005830.0CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416633.10.0predicted protein
TrEMBLA4RU940.0A4RU94_OSTLU; Uncharacterized protein
STRINGABO949260.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP736355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-09TRF-like 3