PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30433
Common NameSELMODRAFT_30433
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NF-X1
Protein Properties Length: 794aa    MW: 86146.8 Da    PI: 7.9238
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30433genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.54.5e-06239256118
  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
               CG+H C+++CH+G+C+ C
     30433 239 CGNHVCSRECHPGDCGDC 256
               ****************99 PP
2zf-NF-X1223.6e-07297314118
  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
               CG+H C+ lCH+GpCppC
     30433 297 CGRHECINLCHLGPCPPC 314
               ****************** PP
3zf-NF-X117.21.1e-05387406120
  zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
               CG+H Cq+lCH G C pC q
     30433 387 CGEHFCQELCHSGHCRPCLQ 406
               ******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.41E-71278No hitNo description
PROSITE profilePS500168.9381873IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135902170IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.762171IPR001841Zinc finger, RING-type
SMARTSM004380.32120138IPR000967Zinc finger, NF-X1-type
PfamPF014220.18121136IPR000967Zinc finger, NF-X1-type
CDDcd060082.83E-7166214No hitNo description
SMARTSM004380.07176195IPR000967Zinc finger, NF-X1-type
PfamPF014220.03176194IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-8229274No hitNo description
SMARTSM004381.5E-4239258IPR000967Zinc finger, NF-X1-type
PfamPF014220.0035239256IPR000967Zinc finger, NF-X1-type
CDDcd060085.55E-11287333No hitNo description
SMARTSM004384.9E-4297316IPR000967Zinc finger, NF-X1-type
PfamPF014229.8E-6297314IPR000967Zinc finger, NF-X1-type
SMARTSM0043815357379IPR000967Zinc finger, NF-X1-type
PfamPF014220.68357369IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-6377429No hitNo description
SMARTSM004381.3E-4387406IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-4387404IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013444462IPR000967Zinc finger, NF-X1-type
PfamPF0142228444461IPR000967Zinc finger, NF-X1-type
SMARTSM004380.03497523IPR000967Zinc finger, NF-X1-type
PfamPF014220.021497512IPR000967Zinc finger, NF-X1-type
PfamPF01422120526551IPR000967Zinc finger, NF-X1-type
SMARTSM004380.65532553IPR000967Zinc finger, NF-X1-type
PROSITE profilePS5106110.391622703IPR001374R3H domain
PfamPF014245.2E-7635699IPR001374R3H domain
SuperFamilySSF827085.49E-5660700IPR001374R3H domain
Gene3DG3DSA:3.30.1370.505.8E-6662704IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
GALPQLAQGL LEKLQKGEME CMICYDMIGR NARVWSCSGC YSIFHLTCIR KWARAPTSVD  60
QSGNWRCPGC QAIQLSPAND LQYWCFCGQQ LEPPVDFYLT PHSCGGTCKK PLDKSKLGLC  120
QHICTLQCHP GPCPPCAAFA LPEACGCGRK VVTRRCIERD EGVVSCGYQC GGMLSCGRHY  180
CTRVCHKDEC GGCKVVVAVA CFCRRKLDRV VCGQVPVPGD VAGNGIFSCG SICGKLLPCG  240
NHVCSRECHP GDCGDCELSP ESVSTCPCKK TTLRALRRSC LDPVPTCGQE CGKYVSCGRH  300
ECINLCHLGP CPPCEVLVEQ KCRCGASSRV VPCNVATSTS DEHSFICDKK CEKKRNCGRH  360
RCNVKCCPSD SGDNHFCMLE CGKKLRCGEH FCQELCHSGH CRPCLQSSFT DLSCACGKSS  420
IPPPVPCGTP RPRCDFLCLV PQPCGHPATH TCHFGECPPC TVLVAKECVG QHVTMRNVPC  480
GSREIKCNRP CGKLRKCGVH PCGKTCHSDP CDSDDSSSLS CGQVCGASRR ECSHTCVAAC  540
HPGSPCPDVR CEFMETITCS CERLTAAVPC EMGGAATRDK APASQRKLSC DDDCVKTQRL  600
KSLADALGIE TNGDPLTAYG SSDCVQEMAK RDSQFVTAVE DRFKYLLLGP KSVACVTGLR  660
VHVFAPLPKD KREVIYQLAQ RWNLSSSSVG WEARRYLVVH VNSKSKMPGR LIKLNVVAPL  720
FNPGLDVDPK LVVALLDLPG EGDISRVVLR FAGECELIWL NDRNAITIFT DPSRAATALK  780
RVDHATPYHG AFVL
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002969132.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD8RD390.0D8RD39_SELML; Uncharacterized protein (Fragment)
STRINGEFJ302480.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]