 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
30343 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
| Family |
C3H |
| Protein Properties |
Length: 370aa MW: 41336.4 Da PI: 10.5921 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30343 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.4 | 1.9e-06 | 171 | 191 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26
C +++ +G C++G+ C+F H+
30343 171 CLDWLNMGRCRFGEECQFEHD 191
899***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MVAGVGKGKK NAFVALLGRA VRAEDDFARA LVESSRDYAS WAKLARARGR REGDAHADAL 60
RLLDSKGHLL NVLDRACEVE DGDDGAKDEV ERARRVREAW TKTKATQRAK FEKSGGAEGV 120
AEARLRKREA KERINASRKE REAREARDKE RKEARLEYAT KVHEARSAGA CLDWLNMGRC 180
RFGEECQFEH DAMSRGNLKD LAVKVGAETG DVKRERNQTE KAERKARAKA MREAGGGDDE 240
DTLGGRFSSS EDESDDDEGD VPGFLKIERA RRAAEALLAT NKTSSSKTNK DAGKSATKKA 300
KHFNEKQLER KQKFLKEGKN QPFVKKGMKK RPQPTESAQK NKKKKPRRAD SERKQKRKGM 360
ARTFFGGDD*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 328 | 344 | KKRPQPTESAQKNKKKK |
| 2 | 343 | 357 | KKPRRADSERKQKRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
