PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30225.m001697
Common NameRCOM_1762610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 269aa    MW: 30018.8 Da    PI: 8.3043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30225.m001697genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
    30225.m001697 14 KGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.21965IPR017930Myb domain
SMARTSM007172.8E-141363IPR001005SANT/Myb domain
PfamPF002494.3E-161461IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-221589IPR009057Homeodomain-like
CDDcd001674.01E-121661No hitNo description
PROSITE profilePS500904.4266289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-96588IPR009057Homeodomain-like
SMARTSM007171766170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHGLLGNKRK LYNRGIDPQT HRPLNSTTSV ATANSDTTTS  120
ATAALISSRK ESTDMSNSSS VSQLLEIQNP LAPITNMKDC KSNIIKVGTD TSAEDSNCSS  180
GVTMEEAYPK INLELSIGLP HHQSPQISSI SFTEQKQRNQ QHQHQLFAYL FSGSSTKSIC  240
LCCSLGFQNN KICSCSNSVI ESWRHPNRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-15138826100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30225.m001697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012074.10.0myb-related protein 308-like
SwissprotP813932e-69MYB08_ANTMA; Myb-related protein 308
TrEMBLB9RHN00.0B9RHN0_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002513249.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-62myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]