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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30225.m001687 | ||||||||
Common Name | RCOM_1761410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 138aa MW: 16020.9 Da PI: 8.2222 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 14 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l ++ ++G W++Ia+ ++ gRt++++k++w+++l 30225.m001687 14 KGAWSREEDDKLRAYILKYGHWnwrelpKWSKIAAQLP-GRTDNEVKNYWHTHL 66 79******************66****************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.848 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.89E-14 | 9 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.7E-21 | 12 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 14 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-11 | 16 | 66 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MVRGPFIDKN GLKKGAWSRE EDDKLRAYIL KYGHWNWREL PKWSKIAAQL PGRTDNEVKN 60 YWHTHLKKRT QRTQSKSGSK EQHPVKQLTE ITPQSDIYEV ESTSSNCFAE DCLSSLEITE 120 SASGDFWTQP FLTDKDGM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30225.m001687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034707 | 1e-34 | KM034707.1 Jatropha curcas clone JcMYB087 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015571053.1 | 5e-82 | transcription factor MYB15 | ||||
TrEMBL | B9RHM0 | 2e-99 | B9RHM0_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002513239.1 | 1e-100 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 2e-22 | myb domain protein 13 |
Link Out ? help Back to Top | |
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Phytozome | 30225.m001687 |