PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011223
Common NameRCOM_1686970
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 492aa    MW: 54834.8 Da    PI: 5.7953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011223genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07295339554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h   +r+R  +i +++  L++++P+       K + ++iL  ++eY+++L
  30190.m011223 295 HETLDRKRKGQISERLMILKSIVPSM-----SKTDEVSILDDTIEYLQKL 339
                    78899********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.157290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-12295356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-5295339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-6295339No hitNo description
Gene3DG3DSA:4.10.280.106.3E-10295351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-5296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVISSFDLVI ACQEEPWQMV TLFGCKMLNL LSAQIWMLIS VMLLHGTDLS KVLEDPNLIQ  60
HVKTSFLEIP FPIVATNTST RSDKDHEILE AKLVPVVGRE ELDAVSPNDS SDDQPAEDSF  120
MVEGINGGAS QVQSWQLMDD DFSNCVHHSL NSSDCISQTI IDPIKVVPVS NNETAHKHCL  180
KDVQECNDTE RTALDLRKDD LHYQGVLSSL LKTCHPLILG PCFQNCNKRS SFVGWKKPRL  240
MHLPKLKSGT SQSLLKKILF QVPRMHVASL LERQEDKGNK VGVLRPEADD IGAGHETLDR  300
KRKGQISERL MILKSIVPSM SKTDEVSILD DTIEYLQKLG KRVEELESCR EFTECEARTR  360
RKPQDAIERT SDNYGSSIIG SKQKSLINKR KAYDIDEAEA EIENIMSKEG SAENISVNIN  420
DKDVVIEIKC PWREGLLLEI IDAASHLKLD SLSVQSSTAD GMLSLTIKSK KGYAALSPGT  480
IKQAIQRVAG KC
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011223
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571770.10.0LOW QUALITY PROTEIN: transcription factor GLABRA 3-like
TrEMBLB9RCC50.0B9RCC5_RICCO; Transcription factor, putative
STRINGXP_002509809.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-110bHLH family protein