PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011015
Common NameRCOM_1680000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 375aa    MW: 42703.8 Da    PI: 9.4335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011015genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023127150123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y C  Cg++F +++ L +H +  H
  30190.m011015 127 YLCRVCGRRFYNNEKLINHFKQiH 150
                    56*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.2E-84570IPR029060PIN domain-like
Gene3DG3DSA:3.40.50.10103.2E-8106130IPR029060PIN domain-like
SuperFamilySSF576675.15E-5126152No hitNo description
PROSITE profilePS5015712.196127155IPR007087Zinc finger, C2H2
PROSITE patternPS000280129150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4131153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061672.74E-16144279No hitNo description
PfamPF019362.8E-7198283IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.2E-8212279IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSSLLDSTPP STPGKFKPEK SPPPLISTTL ITDSSNLTPT ENPRKPHNSV AIFWDLDNKP  60
PNSFPPYEAA FKLKKAASSF GFVKYMVAYA NRHAFSYVPH VVKEQRKERK LLNHLEKKGV  120
IKPVEPYLCR VCGRRFYNNE KLINHFKQIH EREQQKRLNQ IESARGKRRV NLVAKYAMKM  180
QKYKNAARDV LTPKVGYGLA DELKRAGFWV TTVSDKPQAA DVALREHIVD MMDKRRAECL  240
VLVSDDSDFV GVLKEAKLRC VKTVVVGDIN DGALKRVADA EFSWQEILMG KAKKEAVSVV  300
GKWKDRDILK KLEWTYNPEE QKKFVVNAFN DYNGDTDEID NGDFDGFSDE NGANCMQKEA  360
VGAWWELNSE TELIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571651.10.0uncharacterized protein LOC8272138
TrEMBLB9RBR60.0B9RBR6_RICCO; Nucleic acid binding protein, putative
STRINGXP_002509600.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-145C2H2 family protein