![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30190.m010902 | ||||||||
Common Name | RCOM_1675480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 107aa MW: 11928.3 Da PI: 6.5201 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.4e-10 | 12 | 56 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT++ + + +a + + ++ +W+ +ar +g g+t++++k ++ 30190.m010902 12 GSWTAQQNKAFERALAVYDKDtpdRWANVARAVG-GKTPEEVKRHY 56 89********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.217 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 5.4E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.72E-13 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 12 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 12 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.88E-8 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 107 aa Download sequence Send to blast |
MASSSMSSRG SGSWTAQQNK AFERALAVYD KDTPDRWANV ARAVGGKTPE EVKRHYDLLV 60 EDVKYIESGQ VPFPNYRTTG TRGNMDDHER SCITLLPFLD MVSLTAV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-44 | 7 | 95 | 3 | 90 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30190.m010902 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582362.1 | 4e-63 | transcription factor RADIALIS isoform X1 | ||||
Swissprot | Q58FS3 | 1e-43 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | B9RBF6 | 4e-75 | B9RBF6_RICCO; DNA binding protein, putative | ||||
STRING | XP_002509490.1 | 7e-76 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-37 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30190.m010902 |
Publications ? help Back to Top | |||
---|---|---|---|
|