PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 107aa MW: 11928.3 Da PI: 6.5201

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30190.m010902	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.3	9.4e-10	12	56	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT++ + + +a + + ++ +W+ +ar +g g+t++++k ++ 30190.m010902 12 GSWTAQQNKAFERALAVYDKDtpdRWANVARAVG-GKTPEEVKRHY 56 89******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.217	9	64	IPR017884	SANT domain
SMART	SM00717	5.4E-9	10	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.72E-13	12	68	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-6	12	65	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	12	56	IPR001005	SANT/Myb domain
CDD	cd00167	4.88E-8	14	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009630	Biological Process	gravitropism
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010114	Biological Process	response to red light
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MASSSMSSRG SGSWTAQQNK AFERALAVYD KDTPDRWANV ARAVGGKTPE EVKRHYDLLV 60 EDVKYIESGQ VPFPNYRTTG TRGNMDDHER SCITLLPFLD MVSLTAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-44	7	95	3	90	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30190.m010902

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582362.1	4e-63	transcription factor RADIALIS isoform X1
Swissprot	Q58FS3	1e-43	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	B9RBF6	4e-75	B9RBF6_RICCO; DNA binding protein, putative
STRING	XP_002509490.1	7e-76	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	2e-37	RAD-like 1

Link Out ? help Back to Top
Phytozome	30190.m010902

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]