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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
30190.m010868 |
Common Name | RCOM_1674130 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family |
B3 |
Protein Properties |
Length: 418aa MW: 47940.6 Da PI: 7.8145 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
30190.m010868 | genome | JCVI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 55 | 1.5e-17 | 168 | 258 | 3 | 91 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
k l++sdv+++gr+vlpk+ aee+ + +e++ + ++d s ++W++k++y ++ks++yvl+ ++ +Fvk+ng++ gD+++++ ++++++
30190.m010868 168 KDLKTSDVGSLGRIVLPKREAEENlpilS--DKEGILVAIRDvCSTKEWSLKYKYwsNNKSRMYVLE-NTGDFVKQNGMRIGDSLTLY--EDESKK 258
7799**********************643..447899*****7788*******99888888889999.********************..444443 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010262 | Biological Process | somatic embryogenesis |
GO:0010344 | Biological Process | seed oilbody biogenesis |
GO:0010431 | Biological Process | seed maturation |
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MDSFQNSQFS SIRRPLCYSS TSSNSSTQTY HCPAEDNMPT TPFQSPHFQQ EYRPEQAGQN 60 STSAFSMCPY WLSQNGTEIQ TWLLQQNGLS IDQGKKVLDA YKTKIARNKR KLARQRSLSR 120 NSSSSANSIQ VDTRRLAFNM QDSQSTSKRD LYKFCTPDNK KLRVLLRKDL KTSDVGSLGR 180 IVLPKREAEE NLPILSDKEG ILVAIRDVCS TKEWSLKYKY WSNNKSRMYV LENTGDFVKQ 240 NGMRIGDSLT LYEDESKKLL CTHSTEETGE VFPHARRQYF SVKKVEALEA EPSCKQHATN 300 QNYIYIPHTY QARDEEEASL ALLIEQLKHK EQQEEVNSLV TLSMDIAPYR HKEEEKNYGP 360 FNNLTSISIY PQSTAAAMAI QPSSSAHSTM RVVDDHYIDD FYTALDVLPD VNRYNFSL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
6j9c_A | 8e-48 | 156 | 259 | 3 | 106 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 8e-48 | 156 | 259 | 3 | 106 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC146386 | 0.0 | KC146386.1 Ricinus communis cultivar IT196881 clone pENTR-RcLEC2 leafy cotyledon 2 (LEC2) mRNA, complete cds. |