PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m010791
Common NameLOC8287729, RCOM_1690990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 313aa    MW: 35236 Da    PI: 4.7055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m010791genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19112162155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  30190.m010791 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 162
                    59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-32112169No hitNo description
SuperFamilySSF541715.62E-21113169IPR016177DNA-binding domain
SMARTSM003803.6E-36113176IPR001471AP2/ERF domain
PfamPF008476.7E-12113162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-29113169IPR001471AP2/ERF domain
PROSITE profilePS5103223.13113170IPR001471AP2/ERF domain
PRINTSPR003675.0E-10114125IPR001471AP2/ERF domain
PRINTSPR003675.0E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNQIKFSEHK NQTKLTTPLP DTKPPKVVRI TVTDSYATDS SSDEESENEF CSRRRRRVKR  60
FVNEITIESS CSSPNDVVFT SKCKKANRRK FSAEKSSPSS ILPVKNTTTV GKKFRGVRQR  120
PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA IVYDNAAIQL RGSDALTNFI TPPAKLSEPS  180
NSGEESQNVC SPISVLRFPS STSSNEEAES QGAVFSSKEN NEIRDMKEES SVSENFSECS  240
SMFPNYFFDF QTSMRDIFEE TNMVQDGFLS DDLGDMFLDT SVDFGFGLSS WNNTQDNFQD  300
IADLFGSDPL IAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22111184370ATERF1
3gcc_A5e-22111184370ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m010791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509918.10.0ethylene-responsive transcription factor CRF2
TrEMBLB9RCN40.0B9RCN4_RICCO; DNA binding protein, putative
STRINGXP_002509918.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-58cytokinin response factor 2