PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30183.m001293
Common NameRCOM_1645680
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 534aa    MW: 58474.8 Da    PI: 5.7962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30183.m001293genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09356403455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  30183.m001293 356 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 403
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17350421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10350407No hitNo description
Gene3DG3DSA:4.10.280.104.1E-17352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6356403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10358408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEKEKLFMSE GVNSREVPIW NSCNFGMEIS SSNELNSDQI PNSFFNSNWE NSMDQSDPFE  60
SALSSIVSSP NANAVPNSNG DPVMIRELIG RLGNICNSRD ISPQSYINTN NNNSTNTSCY  120
TTPLNSPPKL NISILDSQIR GNTNTNNSHN LPIASLAPLP ADPGFVERAA RFSCFGSSRN  180
LSGLSGQFGS NESSFLSRIP ATGSQVNASN VQQAVADGKP NSDRKLNVIS RSSTPENAEF  240
GDSREESSLS EQIPGGELSI KVQNNNDFSV RKRKAIPRGK AKETPSSSPS ASDVKVAAEK  300
DESTAKRSKS DEANGHDKAK AEQNGNQKQN KDNTKLPEPP KDYIHVRARR GQATDSHSLA  360
ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRM  420
DVNMEALSKD VFQSFGSLPH SLYPLDSSAA LALPYSYQSQ QGVPLPNDMS SNAETQFSMN  480
ALLRRNHSMQ LPPLDGFGDA AARQVSAFWE EELQSVVQMG FVQNQQQGFP LPGE
Cis-element ? help Back to Top
SourceLink
PlantRegMap30183.m001293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573047.10.0transcription factor bHLH77 isoform X2
TrEMBLB9RRL50.0B9RRL5_RICCO; Transcription factor, putative
STRINGXP_002516384.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-84bHLH family protein