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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30174.m008897 | ||||||||
Common Name | LOC8270647, RCOM_1612270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22322.4 Da PI: 8.4997 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.4e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+aela 30174.m008897 7 PCGACKFLRRKCLKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRFDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVSLQAELA 102 7***********************9989******************************************************************** PP DUF260 96 llkee 100 +++++ 30174.m008897 103 YIQAR 107 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.923 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNGGGGPCGA CKFLRRKCLK GCIFAPYFDS DQGTAHFAAV HKVFGASNAS KLLLRIPAHK 60 RFDAVVTLCY EALARVRDPV YGCVGHLFTL QQQVVSLQAE LAYIQARLST LQRHQHPSQP 120 AQSHSQTSVL SSSTSEMPSN SNMSMHFDQL QLQPQHVAVS ESELTNVCHP LGPQLENDEL 180 QALARDFVSR YLPGVRFKPT SSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-38 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-38 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30174.m008897 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511729.1 | 1e-150 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 8e-70 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | B9RDE0 | 1e-148 | B9RDE0_RICCO; LOB domain-containing protein, putative | ||||
STRING | XP_002511729.1 | 1e-149 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 3e-63 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | 30174.m008897 |
Entrez Gene | 8270647 |