PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008814
Common NameRCOM_1609910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 465aa    MW: 50489.9 Da    PI: 7.4433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008814genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15288333555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  30174.m008814 288 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 333
                    9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-19281346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-17288337No hitNo description
Gene3DG3DSA:4.10.280.103.3E-18288341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MTQCVPSWDL EDNPSPAAKH SFRSNSNSSA PDVPMLDYEV AELTWENGQL SMHGLGPPRL  60
PVKTIPSSSP SKYTWEKPRA GGTLESIVNQ ATRLPQQRKT DNITGYGSNE VVPWLGHHHH  120
HHRAATSSPT MTMDALVPCT KQSDDHRSAH VIDSVPAGIG GNCVVGSSTR VGSCSAPTTA  180
TQDEEALLAA KRARVARVPV APEWSSRDQS VSGSATFGRD SHHVTLDTCE MDLGVGFTST  240
SFGSQENTKT ATAVDENDSV CHSDDDDKQK ANGKSSVSTK RSRAAAIHNQ SERKRRDKIN  300
QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVQMMS RMNIQPVMLP MTMQQQLQMS  360
MLAPMNMGMG LAGIGMNVMD MNTISRPNIA GISPVLHPTA FMPMTSWDGS SGGDRLQTAS  420
PTVMHDPLAA FLACQTQPMT MDAYSRMAAI YQQLQQQPPA SSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296ERKRRD
2292297RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008814
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.10.0transcription factor UNE10
SwissprotQ8GZ381e-120UNE10_ARATH; Transcription factor UNE10
TrEMBLB9RD580.0B9RD58_RICCO; DNA binding protein, putative
STRINGXP_002511647.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]