PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30174.m008805

Common Name

RCOM_1609620

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

SBP

Protein Properties

Length: 262aa MW: 29176.5 Da PI: 9.4071

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30174.m008805	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	167	244	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hska++v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ 30174.m008805 167 RCQVEGCHVALVKAKDYHRRHKVCEMHSKASNVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSAH 244 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.06	165	242	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.9E-34	165	229	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.49E-38	166	247	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-31	168	241	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MENGGNVYNN GHINRNKGQT SSNTILGWDM FEPNTSRFDW ASTSNATTLF TTATAVSTSA 60 TGESTSSTTN SLIFPHQSLY YQHHDHHYQQ LSLYAGEGLS HLHPDPHLMC LKLGKRHYFE 120 DTNTIPASDR DITSFSIGKR GKPYYSVVGS QVGPSSSAAA AAVPVPRCQV EGCHVALVKA 180 KDYHRRHKVC EMHSKASNVI VLGLEQRFCQ QCSRFHVVSE FDDAKRSCRR RLAGHNERRR 240 KSAHDSVSRN SCQVIPKKAQ NS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	168	241	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30174.m008805

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583063.1	0.0	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	2e-41	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	2e-41	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	B9RD49	0.0	B9RD49_RICCO; Squamosa promoter-binding protein, putative
STRING	XP_002511638.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	4e-36	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	30174.m008805

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]