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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30174.m008757 | ||||||||
Common Name | LOC8265785, RCOM_1608420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22913.3 Da PI: 4.8465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 108 | 158 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++A+Ir+p++ g +r +lg+++t+e+Aa a+++a+ k++g 30174.m008757 108 YRGVRKRP-WGKYAAQIREPKKKG-ATRLWLGTYDTPEDAALAYDRAAFKIRG 158 9*******.**********97744.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.9E-36 | 107 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 107 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.69E-32 | 108 | 168 | No hit | No description |
Pfam | PF00847 | 9.8E-14 | 108 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-30 | 108 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 108 | 167 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-13 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-13 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MYQDSNSNSF QHSDLSFILE CISHYLLDET EILAAATSIT PLHCYNSNSN SFSSLTENFW 60 SDLLVKLDSG DAILQSASNE EEEEEEEEET IMQTKKAKEK INGNSFSYRG VRKRPWGKYA 120 AQIREPKKKG ATRLWLGTYD TPEDAALAYD RAAFKIRGSK AKLNFPHLAG SHASEMESSL 180 FNCTSPSSGN ASPWFRMTNL DSEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-27 | 108 | 166 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30174.m008757 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511590.1 | 1e-151 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | B9RD01 | 1e-150 | B9RD01_RICCO; DNA binding protein, putative | ||||
STRING | XP_002511590.1 | 1e-150 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-35 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | 30174.m008757 |
Entrez Gene | 8265785 |