PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008717
Common NameLOC8286740, RCOM_1617720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 297aa    MW: 32341.1 Da    PI: 7.0077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008717genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08754346
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                      W+ eEd  + +a++ +  +     +W++Ia++++  R  +++k +++ 
    30174.m008717  7 TWSREEDIAFENAIATHWIEddseeQWEKIASMVP-SRNIEELKQHYRL 54
                     5*****************99***************.***********96 PP
2Myb_DNA-binding42.91.2e-13133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r + + Rt+ q+ s+ qky
    30174.m008717 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVLSRTPTQVASHAQKY 177
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.613360IPR017884SANT domain
SMARTSM007174.2E-5458IPR001005SANT/Myb domain
PfamPF002491.3E-5754IPR001005SANT/Myb domain
CDDcd001671.43E-8756No hitNo description
Gene3DG3DSA:1.10.10.603.3E-5755IPR009057Homeodomain-like
SuperFamilySSF466892.35E-8863IPR009057Homeodomain-like
PROSITE profilePS5129417.568125182IPR017930Myb domain
SuperFamilySSF466894.0E-17128183IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-17130180IPR006447Myb domain, plants
SMARTSM007172.0E-10130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-11131176IPR009057Homeodomain-like
PfamPF002497.2E-11133177IPR001005SANT/Myb domain
CDDcd001677.28E-10133178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESATITWSR EEDIAFENAI ATHWIEDDSE EQWEKIASMV PSRNIEELKQ HYRLLVEDVD  60
AIEAGNVPLP NYVGEETTSS SSKDSHGFSG AVTTDKRLNC GFGSGFMGLG PNSSGHGGKG  120
GSRADQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVLSRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN NGEVSSHQAP ITGQQGNTNP AAGAPAMGSA VKHRAQHHMP  240
SIGMYGAPVG HPVAAPPGHM ASAVGTPVML PPPGHHPHPP YVLPVAYPMP PPQTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-128721173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008717
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511974.10.0transcription factor MYBS1
SwissprotQ9FNN64e-84SRM1_ARATH; Transcription factor SRM1
TrEMBLB9RE350.0B9RE35_RICCO; DNA binding protein, putative
STRINGXP_002511974.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-67MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]